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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
354
ChIP-seq
Assay category
354
DNA binding
Target of assay
294
histone
294
histone modification
160
narrow histone mark
134
broad histone mark
56
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
August, 2021
14
October, 2017
Available data
2769
bam
2582
bigWig
1375
tsv
1281
bed narrowPeak
931
fastq
687
bigBed narrowPeak
354
tagAlign
265
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
153
zippedFastqFolder
103
txt
35
bed bedMethyl
35
bigBed bedMethyl
20
bedpe bed3+
20
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
347
Homo sapiens
Biosample type
238
tissue
96
primary cell
cell line
20
in vitro differentiated cells
Organ
118
brain
70
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
3
epithelium
1
pituitary gland
Project
270
AMP
84
T1D
Genome assembly (visualization)
216
GRCh38
206
hg19
Lab
270
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
month_released!
August, 2021
BIOSAMPLE
ASSAY
354 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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