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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
21
DNA binding
6
Transcription
Target of assay
11
histone
11
histone modification
7
control
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
13
February, 2018
12
December, 2017
2
May, 2021
1
January, 2018
Available data
27
bam
26
fastq
21
bigWig
14
bed narrowPeak
6
tsv
3
bed bed3+
Organism
28
Homo sapiens
Biosample type
28
in vitro differentiated cells
Organ
798
pancreas
662
connective tissue
478
adipose tissue
420
epithelium
386
liver
282
brain
235
heart
207
kidney
164
vasculature
159
bone element
158
blood vessel
122
limb
96
musculature of body
73
artery
61
eye
43
nerve
28
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
1
hg18
Lab
28
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
cell line
month_released!
August, 2021
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
17
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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