Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
170
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
170
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
82
histone modification
81
histone
49
narrow histone mark
47
control
41
transcription factor
32
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
311
bam
287
bigWig
159
tsv
130
bed narrowPeak
98
fastq
70
tagAlign
65
bigBed narrowPeak
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
386
Homo sapiens
Biosample type
cell line
361
tissue
15
in vitro differentiated cells
10
primary cell
Organ
852
pancreas
679
connective tissue
490
adipose tissue
441
epithelium
386
liver
286
brain
207
kidney
195
heart
164
vasculature
159
bone element
158
blood vessel
122
limb
96
musculature of body
73
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
386
AMP
Genome assembly (visualization)
292
hg19
260
GRCh38
Lab
346
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
month_released!
August, 2021
BIOSAMPLE
ASSAY
386 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download