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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
snATAC-seq
18
single cell RNA-seq
13
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
485
Transcription
13
DNA accessibility
6
DNA methylation
Date released
592
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
269
August, 2021
218
June, 2019
197
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
9
April, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
Available data
481
tsv
477
bam
468
bigWig
89
txt
18
fastq
9
bed narrowPeak
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
592
Homo sapiens
Biosample type
545
tissue
cell line
26
in vitro differentiated cells
21
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
1
liver
Project
574
AMP
18
HPAP
Genome assembly (visualization)
481
hg19
476
GRCh38
Lab
574
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
5
audit script error
biosample_type!
cell line
month_released!
August, 2022
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
592 results
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total RNA-seq
RNA microarray
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
1
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