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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
8
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
67
Transcription
4
DNA accessibility
Date released
February, 2021
57
August, 2021
7
February, 2023
7
May, 2022
Available data
2333
bam
2139
bigWig
1364
bed narrowPeak
1000
tsv
886
fastq
687
bigBed narrowPeak
378
tagAlign
269
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
153
zippedFastqFolder
71
txt
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
10
bed bed3
4
hdf5
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
71
Homo sapiens
Biosample type
68
tissue
3
in vitro differentiated cells
cell line
Organ
57
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
71
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
cell line
month_released!
February, 2021
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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