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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
51
total RNA-seq
42
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
Assay category
115
Transcription
81
DNA accessibility
42
DNA binding
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
October, 2019
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
June, 2019
Available data
96
bed narrowPeak
64
xls
62
txt
44
bam
34
bigWig
24
bigBed narrowPeak
12
tsv
5
csv
1
hic
Organism
244
Homo sapiens
Biosample type
227
tissue
cell line
17
primary cell
Organ
841
pancreas
657
connective tissue
477
adipose tissue
414
epithelium
374
liver
272
heart
244
kidney
236
brain
159
bone element
147
vasculature
144
blood vessel
81
limb
68
artery
56
eye
53
musculature of body
41
nerve
29
embryo
24
spleen
20
lung
20
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
197
AMP
47
KPMP
Genome assembly (visualization)
109
GRCh38
35
hg19
Lab
142
Katalin Susztak, Upenn
55
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
6
inconsistent ontology term
biosample_type!
cell line
month_released!
July, 2019
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
244 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
tissue
kidney
75
64
49
27
6
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
kidney glomerular epithelial cell
1
kidney tubule cell
1
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