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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
51
total RNA-seq
42
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
Assay category
161
DNA accessibility
115
Transcription
42
DNA binding
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
Available data
174
bed narrowPeak
122
bam
112
bigWig
102
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
hic
Organism
324
Homo sapiens
Biosample type
295
tissue
29
primary cell
cell line
Organ
848
pancreas
666
connective tissue
479
adipose tissue
432
epithelium
380
liver
324
kidney
302
heart
268
brain
159
bone element
158
vasculature
153
blood vessel
117
limb
86
musculature of body
72
artery
60
eye
43
nerve
29
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
277
AMP
47
KPMP
Genome assembly (visualization)
187
GRCh38
106
hg19
Lab
142
Katalin Susztak, Upenn
135
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
7
inconsistent ontology term
biosample_type!
cell line
month_released!
July, 2019
December, 2018
BIOSAMPLE
ASSAY
324 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
tissue
kidney
13
75
64
49
27
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
primary cell
epithelial cell of proximal tubule
1
10
kidney epithelial cell
1
5
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
glomerular visceral epithelial cell
2
+ See 3 more…
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