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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1363
ChIP-seq
1361
total RNA-seq
496
ATAC-seq
360
single cell RNA-seq
210
DNase-seq
87
RNA microarray
84
snATAC-seq
62
WGBS
51
pCHi-C
22
Hi-C
6
RRBS
5
GRO-seq
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
62
DNA methylation
Date released
41
May, 2022
July, 2019
9
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
16
fastq
8
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
6
tsv
Organism
62
Homo sapiens
Biosample type
47
primary cell
15
tissue
cell line
Organ
51
pancreas
47
epithelium
6
adipose tissue
6
connective tissue
3
liver
2
spleen
Project
47
HPAP
15
AMP
Genome assembly (visualization)
8
GRCh38
Lab
47
Klaus Kaestner, Upenn
15
AMP-T2D consortium
biosample_type!
cell line
month_released!
July, 2019
February, 2018
BIOSAMPLE
ASSAY
62 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
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