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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1409
total RNA-seq
1345
ChIP-seq
500
ATAC-seq
363
single cell RNA-seq
210
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
23
pCHi-C
21
RRBS
20
Hi-C
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Date released
March, 2020
17
May, 2021
4
October, 2019
1
August, 2018
1
February, 2021
Available data
1
bam
1
bed bed3+
1
bedpe bed3+
1
fastq
Organism
23
Homo sapiens
Biosample type
17
primary cell
5
tissue
cell line
1
in vitro differentiated cells
Organ
4
eye
3
connective tissue
1
adipose tissue
1
bone element
1
bone marrow
1
thymus
Project
17
T1D
6
AMP
Genome assembly (visualization)
1
hg19
Lab
17
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
month_released!
March, 2020
BIOSAMPLE
ASSAY
23 results
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pCHi-C
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 11 more…
tissue
islet of Langerhans
4
thymus
1
in vitro differentiated cells
white fat cell
1
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