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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
38
ATAC-seq
9
total RNA-seq
6
DNase-seq
2
single cell RNA-seq
Assay category
63
DNA binding
44
DNA accessibility
11
Transcription
Target of assay
44
histone
44
histone modification
30
broad histone mark
18
control
14
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
68
October, 2019
35
February, 2023
5
May, 2019
3
February, 2020
3
July, 2019
2
August, 2021
2
June, 2019
Available data
89
bed narrowPeak
78
bam
60
bigWig
51
bigBed narrowPeak
11
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
Organism
118
Homo sapiens
Biosample type
116
tissue
cell line
2
primary cell
Organ
801
pancreas
661
connective tissue
468
adipose tissue
443
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
95
GRCh38
60
hg19
Lab
118
AMP-T2D consortium
biosample_type!
cell line
month_released!
October, 2018
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
5
36
1
2
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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