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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
total RNA-seq
169
ChIP-seq
21
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
178
Transcription
169
DNA binding
27
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
80
histone modification
79
histone
49
narrow histone mark
48
control
41
transcription factor
30
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
10
July, 2019
7
November, 2018
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
308
bam
284
bigWig
158
tsv
127
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
383
Homo sapiens
Biosample type
cell line
355
tissue
15
in vitro differentiated cells
13
primary cell
Organ
846
pancreas
661
connective tissue
489
adipose tissue
398
epithelium
383
liver
313
heart
312
kidney
199
brain
122
vasculature
117
blood vessel
87
musculature of body
75
bone element
52
limb
49
artery
40
eye
25
spleen
23
embryo
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
vein
Project
383
AMP
Genome assembly (visualization)
288
hg19
256
GRCh38
Lab
343
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
biosample_type!
cell line
month_released!
October, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
383 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
166
140
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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