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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
single cell RNA-seq
3
Hi-C
2
RNA microarray
2
snATAC-seq
Assay category
7
Transcription
3
3D chromatin structure
2
DNA accessibility
Date released
5
February, 2021
4
December, 2019
3
October, 2022
1
August, 2022
1
May, 2022
October, 2019
Available data
fastq
9
tsv
6
txt
5
csv
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
Organism
14
Homo sapiens
Biosample type
9
tissue
3
primary cell
2
in vitro differentiated cells
Organ
7
kidney
4
epithelium
4
pancreas
1
musculature of body
Project
11
AMP
3
HPAP
Genome assembly (visualization)
4
hg19
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
240
inconsistent ontology term
14
audit script error
biosample_type!
cell line
month_released!
October, 2019
files.file_type!
fastq
BIOSAMPLE
ASSAY
14 results
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single cell RNA-seq
Hi-C
RNA microarray
snATAC-seq
tissue
kidney
5
islet of Langerhans
1
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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