Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
54
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
54
DNA binding
Target of assay
49
histone
49
histone modification
26
broad histone mark
23
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
41
August, 2017
12
November, 2017
9
November, 2018
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2589
bam
2420
bigWig
1469
tsv
1199
bed narrowPeak
931
fastq
625
bigBed narrowPeak
329
tagAlign
264
bed bed3+
255
bed broadPeak
218
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
Organism
249
Homo sapiens
Biosample type
209
tissue
cell line
45
primary cell
1
in vitro differentiated cells
Organ
78
kidney
47
brain
46
musculature of body
32
limb
30
heart
20
pancreas
18
epithelium
18
ureter
11
vasculature
10
connective tissue
7
blood vessel
5
liver
4
eye
3
adipose tissue
2
artery
1
spleen
Project
255
AMP
Genome assembly (visualization)
231
GRCh38
231
hg19
Lab
253
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
month_released!
October, 2019
BIOSAMPLE
ASSAY
255 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download