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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
1
pCHi-C
Assay category
5
3D chromatin structure
Date released
March, 2020
October, 2019
3
October, 2022
1
August, 2018
1
August, 2021
1
November, 2019
Available data
2578
bam
2447
bigWig
1433
tsv
1237
bed narrowPeak
931
fastq
625
bigBed narrowPeak
329
tagAlign
264
bed bed3+
255
bed broadPeak
218
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
11
bed bed3
8
csv
7
bed bedgraph
7
hic
6
bedpe bed3+
4
hdf5
3
cool
1
bedpe
Organism
6
Homo sapiens
Biosample type
3
primary cell
cell line
2
tissue
1
in vitro differentiated cells
Organ
5
pancreas
3
epithelium
1
adipose tissue
1
connective tissue
Project
3
AMP
3
HPAP
Genome assembly (visualization)
4
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
audit script error
biosample_type!
cell line
month_released!
October, 2019
March, 2020
BIOSAMPLE
ASSAY
6 results
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Hi-C
pCHi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
in vitro differentiated cells
white fat cell
1
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