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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
total RNA-seq
1
GRO-seq
Assay category
22
DNA binding
6
Transcription
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
2
May, 2021
1
January, 2018
Available data
28
bam
27
fastq
21
bigWig
14
bed narrowPeak
6
tsv
3
bed bed3+
Organism
29
Homo sapiens
Biosample type
29
in vitro differentiated cells
cell line
Organ
851
pancreas
680
connective tissue
490
adipose tissue
412
epithelium
383
liver
320
kidney
279
heart
200
brain
159
bone element
123
vasculature
117
blood vessel
96
musculature of body
53
limb
49
artery
40
eye
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
29
AMP
Genome assembly (visualization)
21
GRCh38
21
hg19
1
hg18
Lab
29
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
biosample_type!
cell line
month_released!
October, 2019
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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