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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
8
ATAC-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
22
DNA binding
8
DNA accessibility
8
Transcription
Target of assay
12
histone
12
histone modification
10
broad histone mark
7
control
3
transcription factor
2
narrow histone mark
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
27
bam
24
fastq
22
bigWig
15
bed narrowPeak
14
tagAlign
9
bigBed narrowPeak
9
tsv
4
bed broadPeak
Organism
40
Homo sapiens
Biosample type
33
tissue
cell line
5
primary cell
2
in vitro differentiated cells
Organ
16
brain
8
spleen
6
epithelium
5
liver
5
pancreas
3
kidney
1
adipose tissue
1
connective tissue
Project
40
AMP
Genome assembly (visualization)
22
GRCh38
21
hg19
Lab
39
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
brain
15
spleen
7
1
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 4 more…
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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