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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
13
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
Transcription
40
DNA accessibility
6
DNA methylation
Date released
322
August, 2017
258
October, 2019
218
June, 2019
200
May, 2021
150
May, 2020
140
May, 2022
134
February, 2021
120
May, 2019
112
August, 2021
105
February, 2023
94
December, 2017
91
November, 2017
80
April, 2019
74
October, 2018
46
September, 2018
43
July, 2019
42
March, 2020
26
November, 2018
26
November, 2019
24
February, 2018
23
October, 2017
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
5
March, 2019
3
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
84
txt
33
fastq
10
bam
9
bed narrowPeak
9
tsv
4
bed bedgraph
1
bed bed3
1
bed bed3+
1
bigWig
Organism
134
Homo sapiens
Biosample type
95
tissue
35
primary cell
cell line
4
in vitro differentiated cells
Organ
92
bone element
8
skeleton
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
Project
101
AMP
33
HPAP
Genome assembly (visualization)
14
hg19
9
GRCh38
Lab
101
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
27
audit script error
biosample_type!
cell line
assay_slims!
Transcription
BIOSAMPLE
ASSAY
134 results
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Clear Filters
RNA microarray
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
bone element
84
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
+ See 7 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
in vitro differentiated cells
adipocyte
4
See all biosamples
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