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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
total RNA-seq
84
RNA microarray
27
snATAC-seq
single cell RNA-seq
13
ATAC-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
467
Transcription
40
DNA accessibility
6
DNA methylation
Date released
601
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
218
June, 2019
198
February, 2023
169
August, 2021
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
72
September, 2018
53
March, 2020
45
November, 2019
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
12
May, 2023
11
September, 2017
10
April, 2020
10
November, 2020
7
August, 2020
7
December, 2018
7
December, 2019
7
January, 2018
7
January, 2019
6
April, 2018
5
March, 2019
3
March, 2023
3
October, 2022
1
August, 2018
1
August, 2022
Available data
477
bam
476
tsv
468
bigWig
84
txt
33
fastq
9
bed narrowPeak
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
601
Homo sapiens
Biosample type
539
tissue
cell line
36
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
8
skeleton
6
epithelium
6
limb
6
pancreas
3
kidney
Project
568
AMP
33
HPAP
Genome assembly (visualization)
481
hg19
476
GRCh38
Lab
568
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
27
audit script error
biosample_type!
cell line
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
601 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 11 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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