Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
13
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
Assay category
13
Transcription
6
DNA methylation
4
DNA accessibility
Date released
234
August, 2021
199
February, 2023
175
May, 2022
129
August, 2017
110
February, 2021
106
May, 2021
62
October, 2019
59
September, 2020
57
May, 2020
47
September, 2023
42
March, 2020
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
13
November, 2017
8
October, 2017
7
August, 2020
7
January, 2018
4
July, 2018
4
March, 2019
4
November, 2020
3
March, 2023
1
April, 2019
1
August, 2018
1
December, 2019
1
November, 2018
1
November, 2019
1
September, 2018
Available data
bam
476
tsv
468
bigWig
84
txt
18
fastq
9
bed narrowPeak
4
bed bedgraph
1
bed bed3
1
bed bed3+
1
csv
Organism
110
Homo sapiens
Biosample type
88
tissue
18
primary cell
4
in vitro differentiated cells
cell line
Organ
84
bone element
6
epithelium
6
pancreas
4
connective tissue
3
kidney
1
liver
Project
92
AMP
18
HPAP
Genome assembly (visualization)
4
hg19
Lab
92
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
audit script error
biosample_type!
cell line
files.file_type!
bam
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
110 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
primary cell
Langerhans cell
12
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
4
Download