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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
total RNA-seq
84
RNA microarray
74
ChIP-seq
13
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
475
Transcription
74
DNA binding
13
DNA accessibility
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
574
February, 2021
411
August, 2017
295
May, 2020
284
October, 2019
218
June, 2019
168
July, 2018
143
May, 2021
141
August, 2021
120
May, 2019
108
July, 2019
102
February, 2023
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
53
March, 2020
49
April, 2018
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
22
October, 2017
11
September, 2017
10
December, 2019
7
December, 2018
7
January, 2018
7
January, 2019
6
November, 2020
4
August, 2018
3
June, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
553
bam
515
bigWig
477
tsv
89
txt
60
fastq
54
bed narrowPeak
45
bigBed narrowPeak
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
650
Homo sapiens
Biosample type
619
tissue
cell line
26
in vitro differentiated cells
5
primary cell
Organ
478
connective tissue
409
adipose tissue
150
bone element
53
pancreas
8
kidney
8
skeleton
6
limb
2
epithelium
1
liver
Project
650
AMP
Genome assembly (visualization)
528
hg19
523
GRCh38
Lab
650
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
650 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
body of pancreas
33
endocrine pancreas
16
+ See 17 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
pancreatic acinar cell
2
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