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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
4
DNase-seq
2
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
24
DNA binding
6
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
51
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
December, 2017
19
September, 2020
13
July, 2019
7
August, 2020
6
December, 2019
6
February, 2021
6
November, 2017
5
May, 2019
5
May, 2021
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
30
bam
23
bigWig
20
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
33
Homo sapiens
Biosample type
33
primary cell
cell line
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
33
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
3
pancreas
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
33
AMP
Genome assembly (visualization)
25
hg19
21
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
Liver fetal (hepatocyte)
1
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