Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
Assay category
368
DNA binding
Target of assay
301
histone
301
histone modification
166
narrow histone mark
135
broad histone mark
63
control
4
transcription factor
Date released
90
May, 2021
75
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
Available data
2365
bam
2219
bigWig
1397
bed narrowPeak
1080
tsv
884
fastq
674
bigBed narrowPeak
368
tagAlign
264
bed bed3+
258
bed broadPeak
223
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
hic
20
bedpe bed3+
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
362
Homo sapiens
Biosample type
229
tissue
99
primary cell
40
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
18
pancreas
15
musculature of body
adipose tissue
7
epithelium
1
pituitary gland
Project
284
AMP
84
T1D
Genome assembly (visualization)
230
GRCh38
218
hg19
Lab
284
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
inconsistent assembly
biosample_type!
cell line
organ_slims!
adipose tissue
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
368 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
Download