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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
57
total RNA-seq
25
ChIP-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
Assay category
163
Transcription
82
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
378
May, 2021
340
May, 2020
314
August, 2017
275
October, 2019
274
August, 2021
233
February, 2021
200
May, 2022
198
February, 2023
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
80
April, 2019
79
November, 2017
73
September, 2018
59
September, 2020
53
October, 2018
52
March, 2020
49
April, 2018
47
September, 2023
44
November, 2019
40
May, 2024
39
February, 2018
31
June, 2019
23
February, 2020
19
April, 2020
18
November, 2018
18
October, 2017
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
9
November, 2020
7
August, 2020
7
December, 2018
7
January, 2019
6
January, 2018
4
March, 2019
3
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
106
tsv
92
bed narrowPeak
64
xls
57
txt
41
bam
25
bigWig
24
tagAlign
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
274
Homo sapiens
Biosample type
228
tissue
cell line
42
in vitro differentiated cells
4
primary cell
Organ
128
kidney
92
heart
6
blood vessel
6
vasculature
5
connective tissue
4
epithelium
4
liver
2
artery
2
pancreas
adipose tissue
Project
274
AMP
Genome assembly (visualization)
97
GRCh38
37
hg19
Lab
140
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
biosample_type!
cell line
organ_slims!
adipose tissue
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
274 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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