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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
194
DNase-seq
25
ATAC-seq
4
FAIRE-seq
Assay category
371
DNA binding
223
DNA accessibility
Target of assay
304
histone
304
histone modification
191
broad histone mark
113
narrow histone mark
67
transcription factor
22
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
202
June, 2019
64
April, 2019
59
November, 2017
58
May, 2019
50
December, 2017
40
August, 2017
40
October, 2018
28
October, 2019
16
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2249
bam
2123
bigWig
1279
bed narrowPeak
1064
tsv
881
fastq
594
bigBed narrowPeak
370
tagAlign
251
bed bed3+
243
bed broadPeak
207
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
18
bedpe bed3+
18
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
588
Homo sapiens
Biosample type
489
tissue
cell line
88
primary cell
17
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
84
limb
84
pancreas
vasculature
79
blood vessel
75
epithelium
65
liver
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
adipose tissue
6
eye
Project
594
AMP
Genome assembly (visualization)
584
GRCh38
520
hg19
Lab
594
AMP-T2D consortium
Audit category:
27
inconsistent control
23
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
organ_slims!
adipose tissue
vasculature
BIOSAMPLE
ASSAY
594 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
4
tibial nerve
24
2
+ See 45 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
+ See 19 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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