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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
ChIP-seq
Assay category
370
DNA binding
Target of assay
303
histone
303
histone modification
166
narrow histone mark
137
broad histone mark
63
control
4
transcription factor
Date released
90
May, 2021
77
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
Available data
2365
bam
2219
bigWig
1397
bed narrowPeak
1080
tsv
884
fastq
674
bigBed narrowPeak
370
tagAlign
264
bed bed3+
260
bed broadPeak
224
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
hic
20
bedpe bed3+
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
363
Homo sapiens
Biosample type
230
tissue
100
primary cell
40
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
19
pancreas
15
musculature of body
adipose tissue
7
epithelium
1
pituitary gland
Project
286
AMP
84
T1D
Genome assembly (visualization)
232
GRCh38
220
hg19
Lab
286
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
adipose tissue
target.investigated_as!
other context
BIOSAMPLE
ASSAY
370 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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