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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
52
ChIP-seq
2
ATAC-seq
Assay category
198
DNA accessibility
52
DNA binding
Target of assay
48
histone
48
histone modification
26
broad histone mark
22
narrow histone mark
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
182
June, 2019
41
August, 2017
10
November, 2017
9
November, 2018
4
October, 2017
2
October, 2019
1
March, 2019
1
November, 2020
Available data
2696
bam
2553
bigWig
1465
tsv
1296
bed narrowPeak
928
fastq
608
bigBed narrowPeak
378
tagAlign
259
bed bed3+
250
bed broadPeak
213
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
bedpe bed3+
18
hic
11
bed bed3
8
csv
7
bed bedgraph
3
cool
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
244
Homo sapiens
Biosample type
208
tissue
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
blood vessel
10
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
250
AMP
Genome assembly (visualization)
227
hg19
226
GRCh38
Lab
248
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
blood vessel
bone marrow
BIOSAMPLE
ASSAY
250 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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