Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
38
ATAC-seq
total RNA-seq
8
DNase-seq
6
single cell RNA-seq
4
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
90
DNA binding
47
DNA accessibility
6
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
47
October, 2019
35
February, 2023
6
August, 2021
5
July, 2019
4
June, 2019
3
March, 2020
Available data
114
bed narrowPeak
104
bam
83
bigWig
76
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
7
tsv
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
150
Homo sapiens
Biosample type
126
tissue
24
primary cell
cell line
Organ
484
pancreas
348
epithelium
307
heart
279
kidney
brain
215
liver
210
connective tissue
161
vasculature
155
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
71
artery
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
114
GRCh38
84
hg19
Lab
150
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
cell line
organ_slims!
brain
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
150 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
See all biosamples
Download