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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1403
total RNA-seq
1169
ChIP-seq
498
ATAC-seq
360
single cell RNA-seq
178
DNase-seq
87
RNA microarray
76
snATAC-seq
74
WGBS
49
pCHi-C
27
Hi-C
19
RRBS
14
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
74
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
16
fastq
6
tsv
Organism
74
Homo sapiens
Biosample type
47
primary cell
27
tissue
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
4
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
27
AMP
Genome assembly (visualization)
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
27
AMP-T2D consortium
biosample_type!
cell line
organ_slims!
brain
blood
BIOSAMPLE
ASSAY
74 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
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