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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
55
ChIP-seq
2
ATAC-seq
Assay category
198
DNA accessibility
55
DNA binding
Target of assay
50
histone
50
histone modification
28
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
181
June, 2019
39
August, 2017
12
November, 2017
8
November, 2018
8
October, 2019
4
October, 2017
1
March, 2019
Available data
2217
bam
2037
bigWig
1298
bed narrowPeak
1003
tsv
830
fastq
659
bigBed narrowPeak
356
tagAlign
253
bed broadPeak
243
bed bed3+
217
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
21
hic
20
bedpe bed3+
8
csv
5
bed bed3
3
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
247
Homo sapiens
Biosample type
210
tissue
cell line
43
primary cell
Organ
78
kidney
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
5
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
253
AMP
Genome assembly (visualization)
230
hg19
228
GRCh38
Lab
251
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
253 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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