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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
363
ChIP-seq
Assay category
363
DNA binding
Target of assay
297
histone
297
histone modification
164
narrow histone mark
133
broad histone mark
62
control
4
transcription factor
Date released
90
May, 2021
70
August, 2017
66
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
Available data
2753
bam
2539
bigWig
1472
tsv
1313
bed narrowPeak
929
fastq
640
bigBed narrowPeak
363
tagAlign
236
bed bed3+
217
bed broadPeak
193
bigBed broadPeak
159
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
19
bedpe bed3+
19
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
356
Homo sapiens
Biosample type
223
tissue
100
primary cell
40
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
19
pancreas
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
279
AMP
84
T1D
Genome assembly (visualization)
232
GRCh38
208
hg19
Lab
279
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
363 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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