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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
Assay category
377
DNA binding
Target of assay
309
histone
309
histone modification
168
narrow histone mark
141
broad histone mark
64
control
4
transcription factor
Date released
90
May, 2021
85
August, 2017
66
November, 2017
50
May, 2020
48
October, 2019
24
August, 2021
14
October, 2017
Available data
2809
bam
2606
bigWig
1481
tsv
1372
bed narrowPeak
931
fastq
687
bigBed narrowPeak
377
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
370
Homo sapiens
Biosample type
237
tissue
100
primary cell
40
in vitro differentiated cells
cell line
Organ
118
brain
74
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
pituitary gland
Project
293
AMP
84
T1D
Genome assembly (visualization)
231
GRCh38
220
hg19
Lab
293
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
cell line
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
377 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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