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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
34
ATAC-seq
19
total RNA-seq
18
snATAC-seq
17
pCHi-C
Assay category
154
DNA binding
52
DNA accessibility
19
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
184
May, 2021
24
May, 2022
18
February, 2023
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
242
Homo sapiens
Biosample type
143
primary cell
52
tissue
47
in vitro differentiated cells
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
135
T1D
107
AMP
Genome assembly (visualization)
142
hg19
84
GRCh38
Lab
1918
AMP-T2D consortium
318
Klaus Kaestner, Upenn
242
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
organ_slims!
skin of body
files.file_type!
tsv
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
See all biosamples
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