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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
18
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
1
Hi-C
1
small RNA-seq
Assay category
121
Transcription
83
DNA accessibility
18
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
9
control
8
histone
8
histone modification
5
narrow histone mark
3
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
15
October, 2019
14
May, 2023
10
July, 2019
8
February, 2021
5
April, 2019
3
December, 2019
1
June, 2019
1
May, 2019
Available data
175
bed narrowPeak
129
bam
119
bigWig
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
232
Homo sapiens
Biosample type
212
tissue
20
primary cell
cell line
Organ
770
pancreas
656
connective tissue
481
adipose tissue
370
epithelium
325
liver
233
heart
232
kidney
159
bone element
159
brain
87
vasculature
85
blood vessel
55
eye
50
artery
49
musculature of body
38
limb
29
embryo
20
lung
17
nerve
16
skeleton
12
spleen
9
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
185
AMP
47
KPMP
Genome assembly (visualization)
91
GRCh38
21
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
43
AMP-T2D consortium
Audit category:
7
audit script error
3
inconsistent ontology term
biosample_type!
cell line
organ_slims!
skin of body
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
232 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
Hi-C
small RNA-seq
tissue
kidney
75
64
49
9
6
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
8
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
renal cortical epithelial cell
1
1
+ See 1 more…
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