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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
57
total RNA-seq
25
ChIP-seq
2
Capture-C
2
Hi-C
1
RNA microarray
Assay category
163
Transcription
DNA accessibility
25
DNA binding
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
8
control
Date released
579
February, 2021
400
August, 2017
360
May, 2021
253
October, 2019
240
May, 2020
193
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
July, 2019
94
December, 2017
94
February, 2023
91
November, 2017
80
April, 2019
76
October, 2018
59
September, 2018
56
September, 2020
51
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
31
June, 2019
25
February, 2020
20
November, 2019
17
November, 2018
15
October, 2017
10
December, 2019
9
April, 2020
8
November, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
January, 2018
4
August, 2018
4
May, 2023
3
June, 2018
3
March, 2023
3
October, 2022
1
March, 2019
Available data
106
tsv
57
txt
31
bam
24
tagAlign
23
bigWig
16
bed narrowPeak
5
bed bed3+
1
bedpe bed3+
1
hic
Organism
192
Homo sapiens
Biosample type
159
tissue
cell line
30
in vitro differentiated cells
4
primary cell
Organ
92
heart
58
kidney
6
blood vessel
6
vasculature
4
epithelium
4
liver
3
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
193
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
131
AMP-T2D consortium
58
Katalin Susztak, Upenn
2
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
biosample_type!
cell line
organ_slims!
ureter
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
193 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
49
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
7
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
See all biosamples
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