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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
snATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
17
DNA binding
11
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
January, 2021
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
30
Homo sapiens
Biosample type
cell line
30
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
8
T1D
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
biosample_type!
cell line
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
snATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
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