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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
8
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
43
DNA accessibility
14
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bed narrowPeak
88
bam
71
bigWig
62
bigBed narrowPeak
15
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
134
Homo sapiens
Biosample type
133
tissue
cell line
1
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
epithelium
390
liver
335
kidney
287
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
106
GRCh38
71
hg19
Lab
134
AMP-T2D consortium
biosample_type!
cell line
organ_slims!
epithelium
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
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primary cell
smooth muscle cell of the coronary artery
1
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