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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Date released
30
June, 2019
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
47
bigWig
44
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
23
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
65
Homo sapiens
Biosample type
56
tissue
9
primary cell
Organ
590
pancreas
527
connective tissue
418
adipose tissue
261
epithelium
229
kidney
215
liver
159
bone element
106
heart
68
vasculature
65
blood vessel
65
brain
56
eye
56
limb
56
musculature of body
45
artery
18
ureter
16
skeleton
11
lung
8
blood
8
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
43
GRCh38
38
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
assay_slims!
DNA binding
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
65 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
See all biosamples
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