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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
small RNA-seq
3
ChIP-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
Assay category
12
Transcription
3
3D chromatin structure
3
DNA binding
2
DNA accessibility
Target of assay
6
control
Date released
15
July, 2019
3
November, 2017
1
October, 2017
1
October, 2019
Available data
243
bam
222
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
20
Homo sapiens
Biosample type
11
tissue
9
primary cell
Organ
498
connective tissue
414
adipose tissue
411
pancreas
158
liver
128
epithelium
58
bone element
24
heart
20
brain
13
vasculature
12
blood vessel
8
kidney
8
musculature of body
7
embryo
5
limb
4
nerve
2
artery
2
spleen
2
vein
1
pericardium
Project
20
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
20
AMP-T2D consortium
biosample_type!
cell line
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
20 results
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total RNA-seq
small RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
ATAC-seq
tissue
cerebellum (Hemisphere)
1
1
diencephalon
1
1
frontal cortex
1
1
temporal lobe
1
1
brain
1
+ See 2 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
+ See 1 more…
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