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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
90
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
59
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
45
October, 2019
30
June, 2019
25
May, 2019
21
November, 2017
16
July, 2019
2
November, 2018
1
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
140
Homo sapiens
Biosample type
120
tissue
20
primary cell
Organ
569
connective tissue
553
pancreas
424
adipose tissue
260
liver
246
epithelium
168
heart
140
brain
119
kidney
99
vasculature
94
blood vessel
91
limb
58
bone element
55
musculature of body
31
nerve
29
artery
21
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
Project
140
AMP
Genome assembly (visualization)
133
GRCh38
116
hg19
Lab
140
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
5
14
1
temporal lobe
13
1
1
angular gyrus
12
layer of hippocampus
6
frontal cortex
2
1
1
1
+ See 49 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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