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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
40
DNase-seq
11
total RNA-seq
5
ATAC-seq
4
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
1
WGBS
Assay category
241
DNA binding
47
DNA accessibility
18
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
232
histone
232
histone modification
129
narrow histone mark
103
broad histone mark
6
RNA binding protein
6
control
6
transcription factor
Date released
112
October, 2019
66
November, 2017
64
May, 2019
34
June, 2019
25
July, 2019
7
October, 2017
2
November, 2018
1
March, 2020
Available data
353
bam
317
bed narrowPeak
311
bigWig
203
bigBed narrowPeak
118
tagAlign
57
bed broadPeak
48
bigBed broadPeak
44
bed bed3+
42
tsv
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
311
Homo sapiens
Biosample type
272
tissue
cell line
39
primary cell
Organ
570
connective tissue
567
pancreas
425
adipose tissue
290
liver
251
epithelium
222
brain
168
heart
119
kidney
99
vasculature
94
blood vessel
91
limb
68
musculature of body
58
bone element
31
nerve
29
artery
21
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
311
AMP
Genome assembly (visualization)
299
GRCh38
246
hg19
Lab
311
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
biosample_type!
cell line
BIOSAMPLE
ASSAY
311 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
FAIRE-seq
WGBS
tissue
brain
11
14
1
tibial artery
18
2
1
layer of hippocampus
17
ascending aorta
13
1
1
temporal lobe
13
1
1
+ See 76 more…
primary cell
endothelial cell of umbilical vein
12
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
+ See 7 more…
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