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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
ChIP-seq
42
ATAC-seq
41
DNase-seq
26
total RNA-seq
9
single cell RNA-seq
7
Hi-C
4
small RNA-seq
3
pCHi-C
2
FAIRE-seq
2
RRBS
2
WGBS
Assay category
308
DNA binding
85
DNA accessibility
39
Transcription
7
3D chromatin structure
4
DNA methylation
Target of assay
256
histone
256
histone modification
141
narrow histone mark
115
broad histone mark
49
control
6
RNA binding protein
6
transcription factor
Date released
133
October, 2019
91
November, 2017
78
May, 2019
36
February, 2023
35
June, 2019
28
July, 2019
16
October, 2017
15
February, 2020
6
August, 2021
6
March, 2020
2
November, 2018
Available data
354
bam
318
bed narrowPeak
312
bigWig
204
bigBed narrowPeak
118
tagAlign
58
bed broadPeak
49
bigBed broadPeak
45
bed bed3+
42
tsv
21
fastq
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
1
bed bed3
1
tagAlign bed3+
1
tar
Organism
446
Homo sapiens
Biosample type
398
tissue
cell line
48
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
446
AMP
Genome assembly (visualization)
338
GRCh38
255
hg19
Lab
446
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
biosample_type!
cell line
organ_slims!
gonad
BIOSAMPLE
ASSAY
446 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
coronary artery
5
36
2
1
brain
20
1
14
1
1
tibial artery
23
1
2
1
layer of hippocampus
23
aorta
13
1
4
1
1
2
+ See 83 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 8 more…
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