Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
17
total RNA-seq
8
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
45
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
8
January, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
215
bam
197
bigWig
178
bed narrowPeak
118
tagAlign
102
bigBed narrowPeak
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
266
Homo sapiens
Biosample type
237
tissue
cell line
29
primary cell
Organ
852
pancreas
684
connective tissue
491
adipose tissue
440
epithelium
390
liver
330
kidney
306
heart
258
brain
159
bone element
120
vasculature
115
limb
114
blood vessel
89
musculature of body
70
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
258
AMP
8
T1D
Genome assembly (visualization)
192
GRCh38
139
hg19
Lab
258
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
cell line
month_released!
May, 2019
BIOSAMPLE
ASSAY
266 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
cingulate gyrus
14
+ See 77 more…
primary cell
peripheral blood mononuclear cell
8
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
See all biosamples
Download