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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
17
total RNA-seq
12
single cell RNA-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
218
DNA binding
DNA accessibility
33
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
85
October, 2019
28
May, 2019
16
July, 2019
15
October, 2017
12
February, 2020
9
April, 2020
3
March, 2020
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
27
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
259
Homo sapiens
Biosample type
243
tissue
16
primary cell
Organ
701
pancreas
650
connective tissue
483
adipose tissue
362
liver
342
epithelium
258
heart
249
brain
173
kidney
147
bone element
120
vasculature
116
blood vessel
78
limb
61
musculature of body
40
nerve
34
artery
29
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
250
AMP
9
LungMap
Genome assembly (visualization)
183
GRCh38
140
hg19
Lab
250
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
cell line
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
259 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
tissue
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 71 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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