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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
12
single cell RNA-seq
10
snATAC-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
FAIRE-seq
Assay category
203
DNA binding
33
Transcription
15
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
86
October, 2019
79
November, 2017
28
May, 2019
19
April, 2020
18
July, 2019
13
October, 2017
12
February, 2020
3
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
258
Homo sapiens
Biosample type
249
tissue
10
primary cell
Organ
834
pancreas
674
connective tissue
488
adipose tissue
423
epithelium
385
liver
297
heart
257
kidney
239
brain
159
bone element
153
vasculature
151
blood vessel
86
limb
71
artery
57
eye
50
musculature of body
41
nerve
29
embryo
24
spleen
20
lung
18
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
240
AMP
19
LungMap
Genome assembly (visualization)
171
GRCh38
127
hg19
Lab
240
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
biosample_type!
cell line
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
259 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
1
lung
9
10
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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