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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
DNA binding
4
DNA methylation
1
3D chromatin structure
Date released
128
August, 2021
78
June, 2019
47
September, 2023
14
May, 2023
11
July, 2019
8
February, 2021
4
October, 2019
3
December, 2019
Available data
143
bed narrowPeak
87
bam
87
bigWig
79
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
293
Homo sapiens
Biosample type
272
tissue
21
primary cell
cell line
Organ
664
pancreas
531
connective tissue
418
adipose tissue
331
epithelium
293
kidney
216
liver
199
heart
159
bone element
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
56
limb
47
artery
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
47
KPMP
Genome assembly (visualization)
161
GRCh38
85
hg19
Lab
142
Katalin Susztak, Upenn
104
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
2
inconsistent ontology term
biosample_type!
cell line
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
293 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
kidney tubule cell
3
1
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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