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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
10
ChIP-seq
9
DNase-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
Assay category
113
Transcription
90
DNA accessibility
10
DNA binding
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
127
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
8
June, 2019
5
April, 2019
5
October, 2019
3
December, 2019
1
May, 2019
Available data
71
bed narrowPeak
64
xls
62
txt
17
bam
10
tsv
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
7
bigBed narrowPeak
7
bigWig
5
csv
Organism
218
Homo sapiens
Biosample type
207
tissue
11
primary cell
cell line
Organ
254
pancreas
218
kidney
186
epithelium
163
heart
122
brain
95
connective tissue
95
liver
89
bone element
69
blood vessel
69
vasculature
65
adipose tissue
46
artery
27
eye
26
limb
23
musculature of body
20
lung
12
nerve
11
spleen
8
blood
8
bodily fluid
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
171
AMP
47
KPMP
Genome assembly (visualization)
193
GRCh38
hg19
Lab
141
Katalin Susztak, Upenn
47
KPMP
30
AMP-T2D consortium
Audit category:
7
audit script error
2
inconsistent ontology term
biosample_type!
cell line
assembly!
hg19
BIOSAMPLE
ASSAY
218 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
snDrop-seq
RNA microarray
tissue
kidney
75
64
49
7
6
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 2 more…
primary cell
kidney tubule cell
3
epithelial cell of proximal tubule
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
kidney capillary endothelial cell
1
+ See 1 more…
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