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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
75
ATAC-seq
32
ChIP-seq
7
total RNA-seq
1
small RNA-seq
Assay category
153
DNA accessibility
32
DNA binding
8
Transcription
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
64
August, 2021
18
April, 2019
11
May, 2023
10
October, 2019
6
July, 2019
4
May, 2019
Available data
174
bed narrowPeak
118
bam
118
bigWig
102
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
8
tsv
Organism
193
Homo sapiens
Biosample type
165
tissue
28
primary cell
cell line
Organ
580
pancreas
566
connective tissue
424
adipose tissue
263
liver
245
epithelium
217
brain
193
kidney
162
heart
127
vasculature
123
blood vessel
96
limb
66
bone element
64
artery
53
musculature of body
31
nerve
21
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
193
AMP
Genome assembly (visualization)
193
GRCh38
117
hg19
Lab
118
AMP-T2D consortium
75
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
193 results
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DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
small RNA-seq
tissue
kidney
13
75
20
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
primary cell
epithelial cell of proximal tubule
1
8
1
kidney epithelial cell
1
4
1
kidney tubule cell
2
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
+ See 3 more…
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