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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
42
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
pCHi-C
1
small RNA-seq
Assay category
81
DNA accessibility
42
DNA binding
14
Transcription
4
DNA methylation
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
23
April, 2019
15
October, 2019
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
1
March, 2020
Available data
129
bam
119
bigWig
111
bed narrowPeak
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
19
tsv
5
csv
5
txt
4
bed bedMethyl
4
bigBed bedMethyl
Organism
147
Homo sapiens
Biosample type
111
tissue
36
primary cell
cell line
Organ
679
connective tissue
639
pancreas
491
adipose tissue
350
liver
293
epithelium
287
heart
286
brain
170
vasculature
164
blood vessel
158
bone element
146
kidney
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
147
AMP
Genome assembly (visualization)
118
GRCh38
116
hg19
Lab
147
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
19
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
147 results
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DNase-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
pCHi-C
small RNA-seq
tissue
kidney
13
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 11 more…
primary cell
epithelial cell of proximal tubule
1
10
1
1
kidney epithelial cell
1
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
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