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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
370
total RNA-seq
ChIP-seq
133
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
7
DNase-seq
7
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
446
Transcription
153
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
157
July, 2018
104
May, 2022
94
August, 2017
55
February, 2023
40
September, 2018
39
April, 2018
39
November, 2019
37
May, 2021
19
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
7
November, 2018
6
February, 2021
6
July, 2019
5
March, 2019
5
October, 2017
5
September, 2017
4
June, 2019
4
November, 2020
3
August, 2018
3
October, 2019
3
October, 2022
2
August, 2021
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
456
bam
425
bigWig
383
tsv
324
fastq
80
zippedFastqFolder
72
bed narrowPeak
31
bigBed narrowPeak
8
bed broadPeak
6
bed bed3+
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
bigBed broadPeak
6
hic
6
txt
3
cool
1
bedpe
Organism
664
Homo sapiens
Biosample type
388
tissue
276
primary cell
cell line
Organ
664
pancreas
531
connective tissue
418
adipose tissue
331
epithelium
293
kidney
216
liver
199
heart
159
bone element
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
56
limb
47
artery
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
484
AMP
152
HPAP
28
T1D
Genome assembly (visualization)
456
hg19
442
GRCh38
Lab
449
AMP-T2D consortium
152
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
4
audit script error
biosample_type!
cell line
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
664 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
58
7
1
3
4
1
1
body of pancreas
3
4
2
4
2
pancreas
2
2
4
2
1
1
1
1
primary cell
pancreatic alpha cell
52
35
12
31
1
pancreatic beta cell
21
23
12
16
1
pancreatic acinar cell
4
9
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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