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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
20
DNA binding
2
DNA accessibility
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
December, 2018
7
January, 2019
7
November, 2018
1
March, 2020
1
October, 2017
Available data
22
bam
22
fastq
14
bed narrowPeak
14
bigWig
13
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
23
Homo sapiens
Biosample type
23
tissue
Organ
801
pancreas
677
connective tissue
485
adipose tissue
392
epithelium
384
liver
331
kidney
284
brain
277
heart
167
vasculature
162
blood vessel
159
bone element
121
limb
90
musculature of body
75
artery
60
eye
43
nerve
29
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
23
AMP-T2D consortium
biosample_type!
cell line
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
20
1
1
1
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